I've been re-reading Del's blog and way back he used a piece of limb as a plug so the end result looked like a knot. He only seemed to use it once and never mentioned it again. It sounded like a real slick idea.
Yeah, that was for decorative effect, the limb plug has pith in the centre which may create a weak point so I didn't do it again (it was also a lot of work)
Personally I don't like the idea of stone etc. I think the ideal plug should have the same properties as the material around it. I try to use an off cut from the same log, of saw dust/epoxy with the dust being from the same log.
I think the killer is where you have either buried knots which are invisible or small knots which go bigger and deeper than you realise giving effectively a cavity.
Del