Actually Pat I made the process popular with the first few articles in the PA magazine back in early 2000.
I actually started out heat-treating with a hotplate, the heat-gun was a big improvement by making it easier but the results were the same. You do get these slightly darker "spots" but it doesn't seem to make a difference in the end result. If you are meticulous you can minimize these spots to the point where they don't show, this means moving the heat-gun a lot more than 5 times. I probably move the gun a dozen times per limb